Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs9965746 chr18:74535895 G/A 6.2E-9 176 25.53 25.17 10.17 KM Plot
PCPG rs9973493 chr2:242517518 C/T 4.19E-11 178 25.87 24.85 10.3 KM Plot
PCPG rs9975448 chr21:34626855 A/G 0.000431 175 25.28 30.93 21.9 KM Plot
PCPG rs9990629 chr4:4474034 T/C 0.000194 176 24.85 25.92 19.22 KM Plot
PCPG rs9997849 chr4:110977053 C/T 0 178 26.27 18 2.93 KM Plot
PRAD rs10001263 chr4:74508 A/G 7.4E-6 494 31.75 30.8 30.93 KM Plot
PRAD rs10027065 chr4:72939 T/C 7.74E-6 494 30.8 30.97 39.23 KM Plot
PRAD rs10030871 chr4:68786 T/C 2.25E-9 491 30.87 31.13 33.23 KM Plot
PRAD rs10040167 chr5:7313597 C/T 1.19E-8 484 30.77 31.3 10.07 KM Plot
PRAD rs10044736 chr5:138320809 A/G 0.000141 494 29.17 29.63 32.55 KM Plot
PRAD rs10046574 chr7:135170470 C/T 1.88E-9 492 30.53 32.63 3.03 KM Plot
PRAD rs10050631 chr5:171764174 C/T 0.000137 494 27.43 32.43 31.27 KM Plot
PRAD rs10062943 chr5:137995762 A/G 2.8E-5 485 30.8 31.3 27.33 KM Plot
PRAD rs10075255 chr5:7327309 G/A 9.01E-9 492 30.8 31.93 10.07 KM Plot
PRAD rs1010476 chr1:93596936 T/C 1.1E-8 493 9.17 25.98 31.38 KM Plot